Pumpkin chocolate chip muffins are the ideal autumn snack, offering a perfect balance of warmth, sweetness, and comforting flavors. These moist and fluffy muffins are made with wholesome ingredients like pumpkin puree, honey, and whole wheat flour, giving them a nutritious edge without sacrificing taste. Whether you’re looking for a quick breakfast or an easy treat to enjoy with your afternoon coffee, these pumpkin chocolate chip muffins are sure to be a family favorite. The combination of pumpkin and chocolate creates a delightful contrast, making them a seasonal favorite that will fill your kitchen with the smells of fall.
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Why You’ll Love These Pumpkin Chocolate Chip Muffins
Pumpkin chocolate chip muffins are a must-try for anyone who loves the flavors of fall. The beauty of this recipe lies in its simplicity and versatility. Not only are these muffins soft, fluffy, and packed with delicious spices like cinnamon and nutmeg, but they are also made in just one bowl! This means less cleanup and more time to enjoy these pumpkin-packed treats. Plus, they are a healthier alternative to traditional sweet muffins, thanks to the use of pumpkin puree, honey, and whole wheat flour.
Another reason these pumpkin muffins stand out is their ability to stay moist, thanks to the pumpkin and the touch of honey or maple syrup. These muffins are perfect for freezing, so you can always have a batch on hand for a quick snack, breakfast, or school lunch.
Ingredients
Here’s what you need to make these delicious pumpkin chocolate chip muffins:
• Unsalted Butter: Adds moisture and richness to the muffins.
• Canned Pumpkin Puree: The star ingredient that provides moisture and that distinct pumpkin flavor. You can use homemade pumpkin puree as well, just remember to adjust the amount of milk if you’re using fresh puree.
• Honey or Pure Maple Syrup: Adds natural sweetness to complement the pumpkin and balance the spices.
• Milk: Provides the liquid needed to create the right consistency. Use any milk you prefer, whether it’s dairy, almond, or oat milk.
• Eggs: Help bind the ingredients and give the muffins structure.
• Vanilla Extract: Enhances the overall flavor profile with a hint of sweetness.
• Baking Soda and Baking Powder: Provide the rise and texture of the muffins.
• Salt: Enhances the flavors and balances the sweetness.
• Pumpkin Pie Spice (or individual spices): A blend of cinnamon, nutmeg, allspice, and cloves that gives these muffins their cozy, fall flavor.
• White Whole Wheat Flour: Offers a slightly nutty flavor while maintaining a light texture. You can substitute with all-purpose flour if preferred.
• Mini Chocolate Chips: The key to the sweet, melty chocolate pockets in every bite.
Alternative Ingredient Suggestions
If you have dietary preferences or are missing an ingredient, here are a few substitutions to consider:
• Dairy-Free: Replace the butter with coconut oil, and use non-dairy milk and dairy-free chocolate chips for a completely dairy-free muffin.
• Vegan: Use maple syrup instead of honey, and replace the eggs with flax eggs (1 tablespoon ground flaxseed mixed with 2.5 tablespoons water per egg).
• Gluten-Free: Swap the whole wheat flour for a gluten-free all-purpose flour blend to make these muffins gluten-free.
Step-by-Step Instructions
- Preheat Oven and Prepare Muffin Tin
Preheat your oven to 350°F (175°C). Grease a muffin tin or line with paper liners. - Mix Wet Ingredients
In a large mixing bowl, melt the butter. Add the pumpkin puree, honey (or maple syrup), and milk, and whisk until well combined. Stir in the eggs and vanilla extract. - Add Dry Ingredients
To the wet mixture, add the baking soda, baking powder, and salt. Whisk until everything is fully incorporated. - Add Spices and Flour
Stir in the pumpkin pie spice (or cinnamon, allspice, nutmeg, and cloves if you’re using individual spices). Then, fold in the flour gently, being careful not to overmix the batter. - Stir in Chocolate Chips
Add the mini chocolate chips to the batter, ensuring they are evenly distributed. - Fill Muffin Tin
Using a large ice cream scoop or spoon, fill each muffin cup about 3/4 full with the batter. For an extra chocolatey touch, sprinkle a few more chocolate chips on top. - Bake the Muffins
Bake for 15-18 minutes, or until a toothpick inserted into the center of a muffin comes out clean. If making mini muffins, bake for about 12 minutes. - Cool and Serve
Let the muffins cool in the tin for 10 minutes before transferring them to a wire rack to cool completely. Enjoy warm or at room temperature.

Tips & Tricks
- Don’t Overmix: When adding the flour, mix just until incorporated to avoid dense muffins.
- Storage: Store leftover muffins in an airtight container at room temperature for up to 3 days. If you have extras, freeze them for up to 3 months for a quick grab-and-go breakfast.
- Add a Topping: For a bit of crunch, consider sprinkling some chopped nuts or seeds on top of the muffins before baking.
- Test for Doneness: Use a toothpick or cake tester to check that the muffins are done. If it comes out clean, they’re ready to be removed from the oven.
Pairing Ideas and Variations
Pumpkin chocolate chip muffins can be served with a variety of accompaniments for different occasions. Pair them with a hot cup of coffee or a warm spiced cider for the ultimate fall breakfast. For a more indulgent treat, top them with a dollop of whipped cream or a drizzle of maple syrup.
Variations
• Mini Muffins: Make smaller versions of these muffins by using a mini muffin tin. These are perfect for lunchboxes or as bite-sized snacks.
• Spicy Version: If you love heat, try adding a dash of cayenne pepper or ground ginger to the batter for a spicy twist.
• Cranberry Addition: Add dried cranberries or fresh cranberries for a tangy contrast to the sweetness of the pumpkin and chocolate.
Healthy Fall Treats with a Twist
Pumpkin chocolate chip muffins are a wonderful way to enjoy the flavors of fall while also making a healthier choice. The use of whole wheat flour, pumpkin puree, and natural sweeteners like honey makes these muffins a better option than store-bought treats. They are perfect for busy mornings or as an after-school snack, offering a satisfying balance of carbs, protein, and fiber.
With so many ways to customize this recipe, you can make it your own based on dietary preferences or what ingredients you have on hand. Whether you enjoy them as a quick breakfast or a treat for special occasions, these pumpkin chocolate chip muffins are a must-try this fall!
Conclusion
Pumpkin chocolate chip muffins are the perfect treat for fall, blending the cozy flavors of pumpkin with the indulgent touch of chocolate. Not only are these muffins soft and moist, but they are also packed with wholesome ingredients like pumpkin puree, honey, and whole wheat flour. With their easy-to-follow instructions, these muffins come together in just one bowl, making cleanup a breeze. Whether you enjoy them for breakfast, as a snack, or as a lunchbox treat, they’re sure to become a favorite in your kitchen.
Thanks to their versatility, these pumpkin chocolate chip muffins can be customized to suit dietary preferences and ingredient availability. From dairy-free options to vegan swaps, you can enjoy this seasonal favorite no matter your needs. Plus, with the ability to freeze them, you can keep a batch on hand for when you need a quick and delicious snack.
Frequently Asked Questions (FAQs)
1. Can I use fresh pumpkin instead of canned pumpkin puree?
Yes, you can use fresh pumpkin puree in this recipe! When using homemade pumpkin puree, you may want to omit the milk, as fresh pumpkin tends to be more moist than canned. Just make sure to use about 1 cup of pumpkin puree for the recipe.
2. How do I make these muffins gluten-free?
To make gluten-free pumpkin chocolate chip muffins, simply swap out the white whole wheat flour for a gluten-free all-purpose flour blend. Ensure that the blend you choose includes xanthan gum for the best texture.
3. Can I freeze these pumpkin muffins?
Yes, pumpkin chocolate chip muffins freeze very well. After they cool completely, store them in an airtight container or freezer bag. They will stay fresh for up to 3 months. To reheat, simply pop them in the microwave for 20-30 seconds or warm them in the oven.
4. How can I make these muffins vegan?
To make these muffins vegan, you can use maple syrup instead of honey and replace the eggs with flax eggs. To make a flax egg, combine 1 tablespoon of ground flaxseed with 2.5 tablespoons of water for each egg required in the recipe. Use non-dairy milk and dairy-free chocolate chips to complete the vegan version.
More Relevant Recipes
- Pumpkin Banana Bread: This delightful bread combines the flavors of ripe bananas and pumpkin, resulting in a moist, flavorful loaf that’s perfect for breakfast or dessert. It’s a great way to use up ripe bananas while enjoying a seasonal pumpkin twist.
- Apple Pumpkin Streusel Muffins: A warm, comforting fall treat, these muffins feature both apples and pumpkin, topped with a sweet streusel topping. They are a great option for those who enjoy the combination of fruity and spiced flavors in their baked goods.
- Pumpkin Bread with Maple Glaze: This moist pumpkin bread is made even better with a delicious maple glaze on top, making it a perfect dessert or snack for the fall season. The maple glaze complements the spiced pumpkin flavor perfectly, adding an extra layer of sweetness.

Pumpkin Chocolate Chip Muffins
- Total Time: 31 minutes
- Yield: 12 muffins
- Diet: Vegetarian
Description
These pumpkin chocolate chip muffins are soft, fluffy, and filled with warm spices like cinnamon, nutmeg, and allspice. This easy recipe combines wholesome ingredients like pumpkin puree, honey, and whole wheat flour, creating a delicious autumn treat that’s perfect for breakfast, snacks, or packed in lunchboxes. With mini chocolate chips scattered throughout, they offer a delightful balance of sweetness and warmth.
Ingredients
- 6 tablespoons unsalted butter
- 1 cup canned pumpkin puree
- 1/2 cup honey or pure maple syrup
- 1/4 cup milk (dairy, almond, etc.)
- 2 eggs
- 1 teaspoon vanilla extract
- 1 teaspoon baking soda
- 1/2 teaspoon baking powder
- 1/2 teaspoon salt
- 1 tablespoon pumpkin pie spice (or 1 1/2 teaspoons cinnamon, 1 teaspoon allspice, 1/2 teaspoon nutmeg, and 1/4 teaspoon cloves)
- 1 1/2 cups white whole wheat flour (or regular whole wheat flour or all-purpose flour)
- 1/2 cup mini chocolate chips
Instructions
- Preheat the oven to 350°F (175°C) and grease a muffin tin or line with paper liners.
- Melt the butter in a large bowl and then add the pumpkin puree, honey (or maple syrup), and milk. Whisk until well combined. Stir in the eggs and vanilla extract.
- Add the baking soda, baking powder, and salt, whisking until combined. Stir in the pumpkin pie spice (or individual spices listed above).
- Gently mix in the flour, being careful not to overmix.
- Fold in the mini chocolate chips until evenly distributed.
- Scoop the batter into the muffin tin, filling each well about 3/4 full. For an extra touch, sprinkle a few more chocolate chips on top.
- Bake for 15-18 minutes, or until a toothpick inserted into the center comes out clean. Mini muffins will bake in about 12 minutes.
- Cool in the pan for 10 minutes before transferring to a wire rack to finish cooling. Serve warm or at room temperature.
Notes
- If using homemade pumpkin puree, you may need to omit the milk since it contains more moisture than canned pumpkin.
- For a dairy-free version, substitute coconut oil for butter and use dairy-free chocolate chips.
- To make these muffins vegan, use flax eggs instead of regular eggs and maple syrup instead of honey.
- These muffins freeze well for up to 3 months. Store them in an airtight container or freezer bag.
- Prep Time: 15 minutes
- Cook Time: 16 minutes
- Category: Breakfast, Snack
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 muffin
- Calories: 211 kcal
- Sugar: 17g
- Sodium: 219mg
- Fat: 10g
- Saturated Fat: 6g
- Unsaturated Fat: 3g
- Trans Fat: 0g
- Carbohydrates: 29g
- Fiber: 3g
- Protein: 3g
- Cholesterol: 46mg